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MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision

Li, Jianning, Zhou, Zongwei, Yang, Jiancheng, Pepe, Antonio, Gsaxner, Christina, Luijten, Gijs, Qu, Chongyu, Zhang, Tiezheng, Chen, Xiaoxi, Li, Wenxuan, Wodzinski, Marek, Friedrich, Paul, Xie, Kangxian, Jin, Yuan, Ambigapathy, Narmada, Nasca, Enrico, Solak, Naida, Melito, Gian Marco, Vu, Viet Duc, Memon, Afaque R., Schlachta, Christopher, De Ribaupierre, Sandrine, Patel, Rajnikant, Eagleson, Roy, Chen, Xiaojun, Mächler, Heinrich, Kirschke, Jan Stefan, de la Rosa, Ezequiel, Christ, Patrick Ferdinand, Li, Hongwei Bran, Ellis, David G., Aizenberg, Michele R., Gatidis, Sergios, Küstner, Thomas, Shusharina, Nadya, Heller, Nicholas, Andrearczyk, Vincent, Depeursinge, Adrien, Hatt, Mathieu, Sekuboyina, Anjany, Löffler, Maximilian, Liebl, Hans, Dorent, Reuben, Vercauteren, Tom, Shapey, Jonathan, Kujawa, Aaron, Cornelissen, Stefan, Langenhuizen, Patrick, Ben-Hamadou, Achraf, Rekik, Ahmed, Pujades, Sergi, Boyer, Edmond, Bolelli, Federico, Grana, Costantino, Lumetti, Luca, Salehi, Hamidreza, Ma, Jun, Zhang, Yao, Gharleghi, Ramtin, Beier, Susann, Sowmya, Arcot, Garza-Villarreal, Eduardo A., Balducci, Thania, Angeles-Valdez, Diego, Souza, Roberto, Rittner, Leticia, Frayne, Richard, Ji, Yuanfeng, Ferrari, Vincenzo, Chatterjee, Soumick, Dubost, Florian, Schreiber, Stefanie, Mattern, Hendrik, Speck, Oliver, Haehn, Daniel, John, Christoph, Nürnberger, Andreas, Pedrosa, João, Ferreira, Carlos, Aresta, Guilherme, Cunha, António, Campilho, Aurélio, Suter, Yannick, Garcia, Jose, Lalande, Alain, Vandenbossche, Vicky, Van Oevelen, Aline, Duquesne, Kate, Mekhzoum, Hamza, Vandemeulebroucke, Jef, Audenaert, Emmanuel, Krebs, Claudia, van Leeuwen, Timo, Vereecke, Evie, Heidemeyer, Hauke, Röhrig, Rainer, Hölzle, Frank, Badeli, Vahid, Krieger, Kathrin, Gunzer, Matthias, Chen, Jianxu, van Meegdenburg, Timo, Dada, Amin, Balzer, Miriam, Fragemann, Jana, Jonske, Frederic, Rempe, Moritz, Malorodov, Stanislav, Bahnsen, Fin H., Seibold, Constantin, Jaus, Alexander, Marinov, Zdravko, Jaeger, Paul F., Stiefelhagen, Rainer, Santos, Ana Sofia, Lindo, Mariana, Ferreira, André, Alves, Victor, Kamp, Michael, Abourayya, Amr, Nensa, Felix, Hörst, Fabian, Brehmer, Alexander, Heine, Lukas, Hanusrichter, Yannik, Weßling, Martin, Dudda, Marcel, Podleska, Lars E., Fink, Matthias A., Keyl, Julius, Tserpes, Konstantinos, Kim, Moon-Sung, Elhabian, Shireen, Lamecker, Hans, Zukić, Dženan, Paniagua, Beatriz, Wachinger, Christian, Urschler, Martin, Duong, Luc, Wasserthal, Jakob, Hoyer, Peter F., Basu, Oliver, Maal, Thomas, Witjes, Max J. H., Schiele, Gregor, Chang, Ti-chiun, Ahmadi, Seyed-Ahmad, Luo, Ping, Menze, Bjoern, Reyes, Mauricio, Deserno, Thomas M., Davatzikos, Christos, Puladi, Behrus, Fua, Pascal, Yuille, Alan L., Kleesiek, Jens, Egger, Jan

arXiv.org Artificial Intelligence

Prior to the deep learning era, shape was commonly used to describe the objects. Nowadays, state-of-the-art (SOTA) algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from numerous shape-related publications in premier vision conferences as well as the growing popularity of ShapeNet (about 51,300 models) and Princeton ModelNet (127,915 models). For the medical domain, we present a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D models of surgical instrument, called MedShapeNet, created to facilitate the translation of data-driven vision algorithms to medical applications and to adapt SOTA vision algorithms to medical problems. As a unique feature, we directly model the majority of shapes on the imaging data of real patients. As of today, MedShapeNet includes 23 dataset with more than 100,000 shapes that are paired with annotations (ground truth). Our data is freely accessible via a web interface and a Python application programming interface (API) and can be used for discriminative, reconstructive, and variational benchmarks as well as various applications in virtual, augmented, or mixed reality, and 3D printing. Exemplary, we present use cases in the fields of classification of brain tumors, facial and skull reconstructions, multi-class anatomy completion, education, and 3D printing. In future, we will extend the data and improve the interfaces. The project pages are: https://medshapenet.ikim.nrw/ and https://github.com/Jianningli/medshapenet-feedback


Human-AI Collaboration in Thematic Analysis using ChatGPT: A User Study and Design Recommendations

Yan, Lixiang, Echeverria, Vanessa, Nieto, Gloria Fernandez, Jin, Yueqiao, Swiecki, Zachari, Zhao, Linxuan, Gašević, Dragan, Martinez-Maldonado, Roberto

arXiv.org Artificial Intelligence

Generative artificial intelligence (GenAI) offers promising potential for advancing human-AI collaboration in qualitative research. However, existing works focused on conventional machine-learning and pattern-based AI systems, and little is known about how researchers interact with GenAI in qualitative research. This work delves into researchers' perceptions of their collaboration with GenAI, specifically ChatGPT. Through a user study involving ten qualitative researchers, we found ChatGPT to be a valuable collaborator for thematic analysis, enhancing coding efficiency, aiding initial data exploration, offering granular quantitative insights, and assisting comprehension for non-native speakers and non-experts. Yet, concerns about its trustworthiness and accuracy, reliability and consistency, limited contextual understanding, and broader acceptance within the research community persist. We contribute five actionable design recommendations to foster effective human-AI collaboration. These include incorporating transparent explanatory mechanisms, enhancing interface and integration capabilities, prioritising contextual understanding and customisation, embedding human-AI feedback loops and iterative functionality, and strengthening trust through validation mechanisms.


Towards Self-organizing Personal Knowledge Assistants in Evolving Corporate Memories

Jilek, Christian, Schröder, Markus, Maus, Heiko, Schwarz, Sven, Dengel, Andreas

arXiv.org Artificial Intelligence

This paper presents a retrospective overview of a decade of research in our department towards self-organizing personal knowledge assistants in evolving corporate memories. Our research is typically inspired by real-world problems and often conducted in interdisciplinary collaborations with research and industry partners. We summarize past experiments and results comprising topics like various ways of knowledge graph construction in corporate and personal settings, Managed Forgetting and (Self-organizing) Context Spaces as a novel approach to Personal Information Management (PIM) and knowledge work support. Past results are complemented by an overview of related work and some of our latest findings not published so far. Last, we give an overview of our related industry use cases including a detailed look into CoMem, a Corporate Memory based on our presented research already in productive use and providing challenges for further research. Many contributions are only first steps in new directions with still a lot of untapped potential, especially with regard to further increasing the automation in PIM and knowledge work support.


Skeletal Point Representations with Geometric Deep Learning

Khargonkar, Ninad, Paniagua, Beatriz, Vicory, Jared

arXiv.org Artificial Intelligence

Skeletonization has been a popular shape analysis technique that models both the interior and exterior of an object. Existing template-based calculations of skeletal models from anatomical structures are a time-consuming manual process. Recently, learning-based methods have been used to extract skeletons from 3D shapes. In this work, we propose novel additional geometric terms for calculating skeletal structures of objects. The results are similar to traditional fitted s-reps but but are produced much more quickly. Evaluation on real clinical data shows that the learned model predicts accurate skeletal representations and shows the impact of proposed geometric losses along with using s-reps as weak supervision.


Conversational Information Seeking

Zamani, Hamed, Trippas, Johanne R., Dalton, Jeff, Radlinski, Filip

arXiv.org Artificial Intelligence

Conversational information seeking (CIS) is concerned with a sequence of interactions between one or more users and an information system. Interactions in CIS are primarily based on natural language dialogue, while they may include other types of interactions, such as click, touch, and body gestures. This monograph provides a thorough overview of CIS definitions, applications, interactions, interfaces, design, implementation, and evaluation. This monograph views CIS applications as including conversational search, conversational question answering, and conversational recommendation. Our aim is to provide an overview of past research related to CIS, introduce the current state-of-the-art in CIS, highlight the challenges still being faced in the community. and suggest future directions.


How AI and machine learning change everything

#artificialintelligence

By the time today's youth retire, or perhaps sooner, they might see artificial intelligence and machine learning change just about everything in the fab shop. There's an old saying in manufacturing: Automation is only as good as what you tell it to do. Richard Boyd has spent a career proving this statement wrong. Boyd has worked with Hollywood studios and computer gaming companies; launched Virtual World Labs that concentrated on virtual reality, augmented reality, and artificial intelligence; and then sold that company to Lockheed-Martin, where he worked for a time before striking out on his own again. A speaker at this year's FABTECH show in Chicago, Boyd is founder and CEO of Tanjo (rhymes with "bongo"), a Carrboro, N.C., company specializing in AI and machine learning.